Konstantin Okonechnikov
Postdoc at DKFZ German Cancer Research Center
Russia
Summary
👤
Senior🎓
Top SchoolKonstantin Okonechnikov is a bioinformatics postdoc with 16 years of experience building high-performance scientific software and analysis pipelines for NGS data, currently focused on pediatric neuro-oncology at DKFZ. He combines deep programming skills in C++ and Python with expertise in RNA-seq, DNA damage and gene fusion detection, and scalable HPC deployments. His background spans algorithm development during a PhD at the Max Planck Institute and hands-on engineering on the UGENE open-source toolkit and cloud integrations. Early work at national labs and Intel sharpened his numerical and performance optimization skills, enabling efficient implementations of computational biology methods. Based in Russia, he brings a rare blend of research-driven inquiry and production-quality software craftsmanship.
15 years of coding experience
3 years of employment as a software developer
Bachelor, Physics, Bachelor, Physics at Novosibirsk State University (NSU)
English, Russian, German
Github Skills (35)
genes9
phylogenetics9
bioinformatics9
correlation9
genomics9
protein-structure8
cvs8
sequence-alignment8
loops7
seq7
git-repository7
python7
biopython6
cancer-genomics6
spatial5
Programming languages (6)
Github contributions (5)
scchess/Qualimap
Jul 2013 - Aug 2017
Contributions:32 commits in 4 years 1 month
kokonech/InTAD
Mar 2018 - Sep 2020
Correlation of epigenetic signals and genes in TADs/via loops
Contributions:18 commits, 1 PR, 27 pushes in 2 years 6 months
loopsgenomicscorrelationbioinformaticsgenes
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