Kyle Harrington

Senior Staff AI ML Reseach Scientist at napari

Redwood City, California, United States
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Summary

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Kyle Harrington is a Senior Staff AI/ML Research Scientist with 15 years of experience applying frontier machine learning to biological imaging, from molecular structures to whole organisms. At Biohub he leads foundation-model work for large-scale imaging, spearheaded CryoLens (3D generative reconstruction), and co-architected the CZII CryoET Kaggle competition that attracted ~1,200 teams. His background blends academic depth (PhD from Brandeis) and hands-on engineering—co-developing tools like copick for agentic cryoET workflows and co-founding album for decentralized scientific software sharing. A former DARPA technical advisor on lifelong and adversarial ML programs and a steering council member for napari, he bridges robust research, open-source ecosystems, and production ML systems. He’s equally at home developing differentiable biological models and scaling multimodal vision architectures, with a recurring focus on making cutting-edge ML deployable in real biological labs.
code15 years of coding experience
job12 years of employment as a software developer
bookBachelor of Arts (B.A.), Artificial Life, Bachelor of Arts (B.A.), Artificial Life at Hampshire College
bookPh. D., Computer Science, Ph. D., Computer Science at Brandeis University
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Github Skills (200)

python10
simulator10
image-processing10
image-viewer10
forge10
vispy10
3d10
mesh10
system-programming10
tubular10
rendering10
genetic10
fiji10
opengl10
stack-based10

Programming languages (19)

JavaBikeshedCSSC++RustMakefileHTMLJupyter Notebook

Github contributions (5)

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scussatb/GRNEAT

Jan 2016 - Jan 2017

Contributions:8 commits, 2 PRs, 5 pushes in 1 year
gene-regulatory-networkevolutionregulatoryaugmenting-topologiesbioinformatics
kephale/napari

Aug 2022 - Dec 2024

napari: a fast, interactive, multi-dimensional image viewer for python
Contributions:3 reviews, 4 PRs, 153 pushes in 2 years 5 months
multi-dimensionalpythonimageimage-viewerdimensional
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Kyle Harrington - Senior Staff AI ML Reseach Scientist at napari