Laurent Guerard
BioImage Analysis Specialist at Biozentrum, University of Basel
Sierentz, Grand Est, France
Summary
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Senior🎓
Top SchoolLaurent Guerard is a BioImage Analysis Specialist with 11 years’ experience building bespoke image-processing pipelines and training researchers at the Biozentrum, University of Basel. He combines programming fluency in Python, Groovy, Java, MATLAB and IJ Macro with deep domain knowledge across mouse behavior, single-cell, spatial transcriptomics, lightsheet and whole-slide imaging. Beyond scripting and workshops, he maintains and optimizes the computing and microscope infrastructure that keeps multi-group facilities running smoothly, and actively lowers the barrier to deep learning by publishing accessible documentation and tools. Trained in bioinformatics and cell biology, he uniquely inhabits the intersection of developer and scientist—prioritizing efficient, FAIR-compliant data practices so teams can focus on discovery rather than data wrangling.
11 years of coding experience
1 year of employment as a software developer
Master's degree, Bioinformatics, Master's degree, Bioinformatics at Université de NantesBachelor's degree, Cell Biology and Animal Physiology, Bachelor's degree, Cell Biology and Animal Physiology at Nantes Université
French, English
Stackoverflow
13reputation
344reached
0answers
3questions
Github Skills (159)
spatial-transcriptomics10
imagej10
segmentation10
google-play10
generalization10
fiji9
music9
snakemake9
pdf-conversion9
microscopy9
wrench9
player9
image-analysis8
pipeline8
bolt8
Programming languages (14)
Github contributions (5)
lguerard/3DGolgiCharacterization
Oct 2020 - Jan 2024
Fiji script to calculate Golgi Intensity and volume in 3D
Contributions:4 releases, 4 PRs, 6 pushes in 3 years 4 months
calculatevolumefiji
imcf-shareables/particle-count-3d
Jul 2022 - Jan 2024
Contributions:2 releases, 2 PRs, 6 pushes in 1 year 6 months
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