Lee Katz
Atlanta, Georgia, United States
Summary
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RockstarLee Katz is a team lead in the meningitis branch at the CDC with 16 years of experience who still identifies strongly as a researcher. Based in Atlanta, he blends public health leadership with hands-on bioinformatics and automation work, contributing to foundational projects like BioPerl and Bioconda. His open-source contributions focus on improving bioinformatics tooling—fixing critical bugs, enhancing documentation, and automating build and packaging workflows to support reproducible deployments. Colleagues rely on him for practical solutions that bridge laboratory research and reliable software delivery. He brings a rare mix of epidemiology-focused domain knowledge and deep technical craftsmanship in backend and build systems. An understated but consistent contributor, he quietly improves the tools that enable others to do better science.
15 years of coding experience
Stackoverflow
1reputation
198reached
0answers
1question
Github Skills (16)
bioinformatics10
bioperl10
bash10
conda10
toolkits10
bootstrapping10
perl10
package-management10
documentation9
makefile7
gnu-make7
rust7
character-encoding6
putty6
docker4
Programming languages (21)
Github contributions (5)
bioperl/bioperl-live
May 2016 - May 2019
Core BioPerl 1.x code
Role in this project:
Back-end Developer
Back-end DeveloperContributions:6 commits, 4 PRs, 5 comments in 3 years
Contributions summary:Lee primarily contributed to the `BioPerl` codebase, focusing on documentation updates and bug fixes related to the `Bio::Tree::Statistics` and `Bio::SeqIO::fasta` modules. Their work involved correcting documentation, addressing a bootstrapping bug, and implementing a new method called `transfer_bootstrap_expectation`. These changes suggest a focus on improving the functionality and usability of bioinformatics tools within the BioPerl framework.
bioperlpdb-filesbiologytoolkitbioinformatics
bioconda/bioconda-recipes
Jan 2021 - Jan 2025
Conda recipes for the bioconda channel.
Role in this project:Automation Engineer / Build & Release Engineer
Automation Engineer / Build & Release EngineerContributions:9 reviews, 33 PRs, 9 pushes in 4 years
Contributions summary:Lee primarily contributed to automating build processes and package management within the bioconda repository. Their commits focused on updating and modifying build scripts (build.sh, post-link.sh), and meta.yaml files, including modifications to support different versions of software (Kalamari and Sneakernet-qc). They frequently addressed errors related to package installations, dependencies, and test configurations to ensure build and deployment processes. Additionally, the user worked on incorporating new packages.
recipescondabiocondabioinformaticspackage-management
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