Li-ting Chen
Postdoctoral Researcher at Prinses Máxima Centrum voor kinderoncologie
Utrecht, Utrecht, Netherlands
Summary
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Senior🎓
Top SchoolLi-ting Chen is a postdoctoral researcher in cancer genomics and single-cell bioinformatics based in Utrecht, with eight years of cross-disciplinary experience bridging veterinary medicine, regenerative biology, and computational genomics. She leads analytical strategy for spatial transcriptomics and single-cell projects at the Princess Máxima Center, translating complex data into actionable biological insights and collaborating closely with groups studying healthy and diseased bone marrow. Her background—MDVM from National Taiwan University and an MS in Biology of Disease from Utrecht—gives her a rare combination of clinical, veterinary, and computational perspectives that inform translational cancer research. Proficient in Python and machine learning, she has a track record of developing lineage-tracing and multi-omics analyses from internships at the Hubrecht Institute and doctoral work at UMC Utrecht. Outside the lab she draws inspiration from music and nature, and maintains a public codebase on GitHub that reflects her focus on reproducible single-cell workflows.
8 years of coding experience
Doctor of Veterinarian Medicine Veterinary Medicine, Doctor of Veterinarian Medicine Veterinary Medicine at National Taiwan UniversityMaster of Science - MS Biology of diseases, Master of Science - MS Biology of diseases at Utrecht University
Github Skills (84)
systems-biology9
cancer-genomics9
taxonomy9
nmf9
genomics9
bioinformatics9
tsne9
sequence9
biodiversity9
phylogeny8
kraken8
time-management8
swap8
classification8
genomicranges8
Programming languages (8)
Github contributions (5)
zztin/concall
Jul 2019 - Aug 2021
Concall is a consensus calling tool for long rolling-circle amplification product produced by nanopore sequencing. Concall uses snakemake pipeline which create independent virtual environment and made it easily adapt to different operating system.
Contributions:5 PRs, 195 pushes, 13 branches in 2 years
callingnanoporenanopore-sequencingconsensus-callingcircle-rolling
zztin/FragmentOmics
Jul 2020 - Jul 2023
Tools which deal with multiple single cell measurements
Contributions:17 pushes, 1 branch in 3 years
dealmeasurementssingle-cell
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