LiliĀ Blumenberg
Principal Scientist, Bioinformatics
New York, New York, United States
Summary
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Top SchoolLili Blumenberg is a Principal Scientist in Bioinformatics with nine years of experience translating multi-omics data into actionable cancer immunotherapy targets. She combines deep expertise in proteomics, phosphorylation signaling, and RNA-seq deconvolution with hands-on development of tools like PhosphoDisco, CellCycleComposition, hypercluster and BlackSheep to accelerate cohort-scale analyses. At NYU she was a lead contributor to CPTAC breast cancer studies and now drives bioinformatics strategy and production analytics at Regeneron. Comfortable across supervised and unsupervised machine learning, she optimizes pipelines for scale and reproducibility using Python, scikit-learn and workflow automation. Her work blends academic rigor with product-focused delivery, making complex biological signals tractable for personalized therapy discovery.
9 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy - PhD Systems and Computational Biomedicine, Doctor of Philosophy - PhD Systems and Computational Biomedicine at NYU School of Medicine, Sackler Institute of Graduate Biomedical SciencesBachelor's Degree Cell/Cellular and Molecular Biology, Bachelor's Degree Cell/Cellular and Molecular Biology at Cornell UniversityHunter College High School
Github Skills (54)
package-management10
conda10
bioinformatics10
bioconda10
transcriptomics8
meta-learning8
feature-selection7
network-graph7
auto-scroll7
docstrings7
auto-generate7
python-interface7
single-cell-analysis7
automated-machine-learning6
igraph6
Programming languages (5)
Github contributions (5)
ruggleslab/blackSheep
Jul 2019 - Feb 2021
Contributions:116 commits, 49 pushes, 6 branches in 1 year 7 months
liliblu/hypercluster
Dec 2019 - Jul 2022
Contributions:1 release, 164 commits, 104 pushes in 2 years 7 months
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