Lim Heo
Cambridge, Massachusetts, United States
Summary
👤
SeniorLim Heo is a Senior Principal Scientist and computational biophysicist with over a decade of hands-on experience in structural bioinformatics and method development, authoring 38 peer-reviewed papers and earning an h-index of 23. He has pioneered top-performing techniques for protein structure prediction, refinement, and docking that have repeatedly ranked highly in CASP, CAPRI, and GPCR Dock challenges. Skilled in combining physics-based simulation (MD on platforms including Anton2 and OpenMM) with ML approaches (SE(3)-equivariant and generative models in PyTorch), he builds end-to-end pipelines leveraging tools like AlphaFold, Rosetta, and MODELLER. A collaborative scientist, Lim has bridged computational and experimental teams across academic and industry settings, mentored students, and delivered invited talks on AI-driven drug discovery. Based in Cambridge, MA, he now applies this multidisciplinary toolkit at Bristol Myers Squibb, translating methodological innovations into real-world biomedical impact.
10 years of coding experience
Github Skills (31)
viterbi10
folding9
symmetry9
bioinformatics9
cpp8
protein-structure8
pdb-files8
sequence-alignment8
structural-biology8
protein-sequences7
dynamics7
autoencoder7
formatter7
pdb7
proteins7
Programming languages (4)
Github contributions (5)
huhlim/mdtraj
Nov 2022 - Nov 2024
An open library for the analysis of molecular dynamics trajectories
Contributions:2 PRs, 8 pushes in 2 years 1 month
pythonmolecular-dynamicsmolecular-dynamics-trajectoriesmoleculardynamics
huhlim/alphafold-multistate
Aug 2021 - Jan 2023
Contributions:54 commits, 2 PRs, 54 pushes in 1 year 5 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.