Lingqi Luo
Senior Data Scientist
Boston, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolLingqi Luo is a Senior Data Scientist with a Ph.D. in Bioinformatics and over a decade of combined wet-lab and computational experience turning complex omics datasets into actionable insights. She has deep expertise building and benchmarking reproducible NGS pipelines (WGS/WES/RNA-seq/scRNA-seq) across HPC and AWS, and routinely applies statistical modeling in R to drive translational cancer immunology projects. At institutions including Memorial Sloan Kettering and Boehringer Ingelheim she led cohort studies, antigen discovery for bi-specific antibody strategies, and developed QC and clinical NGS workflows under CLIA/CAP. Comfortable across Python, shell, Docker, and web stacks, she also authors reproducible notebooks and containerized pipelines to scale analyses and train junior bioinformaticians. Her background in cellular biology and early hands-on Illumina sequencing work gives her practical intuition for experimental design and data provenance that many computational scientists lack. Based in Boston, she combines academic rigor and peer-reviewed publications with production-grade deployment of bioinformatics tools in regulated and cloud environments.
10 years of coding experience
4 years of employment as a software developer
Master of Science, Microbiology, General, Master of Science, Microbiology, General at Peking UniversityBachelor of Science (B.S.), Computer Science, Bachelor of Science (B.S.), Computer Science at Boston University
English, Chinese
Github Skills (22)
chemistry7
cheminformatics6
python6
pipeline5
mouse5
materials-informatics5
linux5
conda5
toolbox5
package-management4
ecosystem3
package-manager2
bioconductor2
gatk2
extraction1
Programming languages (4)
Github contributions (5)
luolingqi/Mouse_WES_Somatic_Pipeline
Oct 2020 - Mar 2021
This is an Diaz Lab internal mouse WES somatic variant calling pipeline (primary analysis only) using GATK/Mutect
Contributions:3 releases, 55 commits, 2 PRs in 4 months
callinginternalpipelinevariant-callingmouse
luolingqi/newGitTest
Feb 2016 - Apr 2017
Contributions:3 pushes, 1 branch in 1 year 1 month
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