R toolkit for single cell genomics
Role in this project:
Back-end Developer Contributions:6 commits, 8 PRs, 82 comments in 2 years 4 months
Contributions summary:Marcel's commits primarily focus on improving the Seurat R toolkit's functionality and maintainability. A significant portion of the changes involved refactoring and standardizing the output of progress messages, directing them to STDERR for better compatibility with tools like knitr. These changes impact several core functions within the Seurat package, enhancing how the toolkit interacts with various environments and external tools. The user also addressed specific issues like transforming data for single-cell identities in AverageExpression and using a random seed for the Leiden algorithm.
single-cell-genomicshuman-cell-atlassingle-cell-rna-seqcran
Packages for GNU Guix that have not yet or will not be submitted upstream for various reasons
Contributions:35 pushes, 25 branches in 4 years
upstreamgnuguixgnu-guix