Marcelo Polêto

Assistant Professor at Universidade Federal de Viçosa

Minas Gerais, Brazil
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Summary

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Senior
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Top School
Marcelo Polêto is an assistant professor and computational biochemist with nine years of experience applying molecular dynamics, polarizable force fields, and enhanced sampling methods to enzyme engineering for sustainability. He is the main developer of TUPÃ, an open-source tool for analyzing intrinsic electric fields in molecular simulations, reflecting a strong mix of software engineering and domain expertise. His career spans postdoctoral and research roles in Brazil and the US, including Virginia Tech and USP, where he combined HPC and Python-driven tooling to push methodological advances. Marcelo’s work bridges fundamental computational chemistry and practical enzyme design, and he brings a global perspective shaped by time at Uppsala University and collaborations across international labs.
code9 years of coding experience
job7 years of employment as a software developer
bookBachelor of Biochemistry, Biochemistry, Bachelor of Biochemistry, Biochemistry at Universidade Federal de Viçosa
bookDoctor of Philosophy - PhD, Cell and Molecular Biology - Computational Chemistry, Doctor of Philosophy - PhD, Cell and Molecular Biology - Computational Chemistry at Federal University of Rio Grande do Sul
bookMolecular Biotechnology, Molecular Biotechnology at Uppsala University
languagesEnglish, Portuguese
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Github Skills (35)

simulation10
molecular-simulation10
simulations10
dynamics10
tup10
python9
computational-chemistry9
molecular-dynamics-simulation9
science9
binder9
cuda8
high-performance8
harmonic8
mdanalysis8
sampling7

Programming languages (5)

C++PerlJupyter NotebookRich Text FormatPython

Github contributions (5)

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mdpoleto/tupa

Nov 2021 - Jan 2023

TUPÃ was developed to analyze electric field properties in molecular simulations
Contributions:7 releases, 171 commits, 12 PRs in 1 year 2 months
pythonpropertiessimulationssimulationmolecular
mdpoleto/FF_parametrization

Nov 2019 - Jan 2024

Contributions:3 pushes, 1 branch in 4 years 2 months
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Marcelo Polêto - Assistant Professor at Universidade Federal de Viçosa