Maria Doyle
Training Coordinator
Ireland
Summary
🤩
Rockstar🎓
Top SchoolMaria Doyle is a training coordinator and community-focused bioinformatician with 11 years' experience bridging computational biology, open-source tooling, and hands-on training across Europe. Currently coordinating training at ELIXIR Ireland and serving as Bioconductor Community Manager, she combines program development with active technical contributions to flagship projects like Galaxy (tools-iuc, training-material) where she has implemented R-based differential expression tools and improved genomic training materials. Her background includes a long tenure as a bioinformatician at Peter MacCallum Cancer Centre and a PhD in Molecular Biology from University College Dublin, giving her deep domain expertise in genomics workflows. She excels at turning complex analyses into teachable content—adding speaker notes, refining slide decks, and producing reproducible tool wrappers—while also improving backend tool modularity and test coverage. Notably, she contributes both code and pedagogy, a blend that helps communities adopt best-practice bioinformatics methods at scale.
11 years of coding experience
15 years of employment as a software developer
PhD Molecular Biology, PhD Molecular Biology at University College Dublin
Github Skills (16)
markdown10
user-manual10
bioinformatics10
material-design10
tooling10
galaxy10
material310
biom10
markdown-it10
trainings10
material-components10
r10
jekyll9
wrapper9
cheminformatics8
Programming languages (18)
Github contributions (5)
galaxyproject/tools-iuc
May 2017 - Jul 2021
Tool Shed repositories maintained by the Intergalactic Utilities Commission
Role in this project:
Backend Developer
Backend DeveloperContributions:4 reviews, 621 commits, 156 PRs in 4 years 2 months
Contributions summary:Maria added a tool for differential expression analysis using the limma-voom method. The tool takes in count data and gene annotations as input and generates various plots and tables as output. The commit details indicate that the user implemented the tool using the R language and several relevant libraries, which enables this kind of analysis.
intergalacticrepositoriesusegalaxywrapperscommission
galaxyproject/training-material
Jun 2018 - Mar 2022
A collection of Galaxy-related training material
Role in this project:Technical Writer
Technical WriterContributions:7 reviews, 272 commits, 50 PRs in 3 years 9 months
Contributions summary:Maria contributed significantly to the repository by adding and modifying training materials, specifically slide decks. Their work involved creating, editing, and structuring content for tutorials, particularly those related to genome editing and CRISPR screen analysis. The user's contributions include adding speaker notes, fixing slide formatting, and updating images, indicating a focus on improving the clarity and presentation of the educational materials.
chip-seqmetagenomicsrnaseqtraining-materialusegalaxy
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