Mark Flynn
Software Developer 3 at University of New Mexico
United States
Summary
👤
Senior🎓
Top SchoolMark Flynn is a software developer with 11 years of experience who bridges academic research and production engineering, currently building genomics workflow frameworks at Los Alamos National Laboratory. With a PhD in neurobiology and an MS in computer science, he specializes in modeling, simulation, and analysis of complex systems—from neural circuits and ant colonies to satellite- and weather-derived datasets. He has a track record of turning scientific algorithms into production pipelines and APIs, having implemented DataONE’s Python API, automated satellite-data processing systems, and AWS-backed data platforms. Comfortable across research and industry stacks, he combines statistical rigor and creative problem-solving to deliver robust, test-driven solutions for data-intensive science.
11 years of coding experience
9 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Neurobiology and Neurosciences, Doctor of Philosophy (Ph.D.), Neurobiology and Neurosciences at University of DelawareMaster's degree, Computer Science, Master's degree, Computer Science at The University of New MexicoBrandywine High School
English
Github Skills (43)
genomics-visualization9
population-genetics9
genomics8
sequence8
cromwell8
assembly8
biology8
bioinformatics8
microbiome7
transcriptomics7
python7
wdl6
pipeline6
mongodb5
mocking5
Programming languages (9)
Github contributions (5)
microbiomedata/nmdc-edge
May 2023 - Mar 2025
Web-based interface to the NMDC EDGE platform
Contributions:22 releases, 50 reviews, 49 PRs in 1 year 10 months
cromwellexpressmongonodereactjs
LANL-Bioinformatics/kbase-gottcha2
Jan 2019 - May 2021
GOTTCHA2 KBase app
Contributions:1 PR, 40 pushes, 3 branches in 2 years 4 months
kbase
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