Martin Raden
Dozent at Eberhard Karls Universität Tübingen
Greater Freiburg Area Germany
Summary
🤩
Rockstar🎓
Top SchoolMartin Raden is an experienced bioinformatics researcher and lecturer with nine years of focused work in algorithm and software development across RNA structure/interactions, theoretical chemistry, protein modeling and ecological applications like forest growth analysis. He develops well-documented, open-source implementations in C++, Java, Python, R and more, and maintains reproducible toolchains including contributions to the widely used bioconda-recipes for packaging bioinformatics software. As a senior postdoc and current Dozent, he combines research, project coordination and e-learning–driven blended teaching to directly transfer practical digital skills to students of diverse backgrounds. His background in constraint-programming for lattice protein models and hands-on maintenance of the Freiburg RNA Tools webserver reflect a rare blend of theoretical rigor and production-grade software engineering.
9 years of coding experience
Dr. rer. nat., Bioinformatics, magna cum laude, Dr. rer. nat., Bioinformatics, magna cum laude at Albert-Ludwigs-Universität Freiburg im BreisgauDiplom-Ingenieur, Bioinformatik, Diplom-Ingenieur, Bioinformatik at Friedrich-Schiller-Universität Jena
Github Skills (10)
bioinformatics10
bash10
conda10
package-management10
build-automation10
linux9
openmp8
boost8
docker4
dockers4
Programming languages (15)
Github contributions (5)
bioconda/bioconda-recipes
Nov 2016 - Jan 2022
Conda recipes for the bioconda channel.
Role in this project:
DevOps Engineer & Package Maintainer
DevOps Engineer & Package MaintainerContributions:33 reviews, 43 commits, 173 PRs in 5 years 3 months
Contributions summary:Martin primarily focused on maintaining and updating recipes within the bioconda-recipes repository. Their contributions involved adapting build configurations for various bioinformatics tools like IntaRNA and Vienna RNA to ensure compatibility across different operating systems and dependencies. They addressed build failures, updated package versions, optimized build processes, and integrated with newer versions of boost and other libraries. Furthermore, they also contributed to general improvements, refactoring and adapting existing configurations.
recipescondabiocondabioinformaticspackage-management
BackofenLab/GGL
Apr 2017 - Jul 2017
Contributions:2 releases, 35 commits, 2 PRs in 3 months
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