Marwan Zouinkhi
Software Engineer II at Howard Hughes Medical Institute
Ashburn, Virginia, United States
Summary
👤
Senior🎓
Top SchoolMarwan Zouinkhi is a Software Engineer II with 11 years of experience specializing in machine learning for teravoxel-scale microscopy, focusing on 3D image segmentation, reconstruction, visualization and distributed batch processing. At HHMI Janelia he leads ML operations for petabyte-scale segmentation projects, from preprocessing and active learning to training, evaluation and deployment of robust models. His background blends academic PhD-level research in scalable light-sheet reconstruction with hands-on engineering—building versioned nD data storage and high-performance visualization tooling. He has a track record of shipping production systems and annotation tools across research and product contexts, and a penchant for squeezing performance out of large-volume imaging pipelines that most engineers rarely encounter.
11 years of coding experience
8 years of employment as a software developer
Doctor of Philosophy - PhD, Digital Health & Machine Learning, Doctor of Philosophy - PhD, Digital Health & Machine Learning at Hasso Plattner InstituteDipl.-Ing., Software Engineering, Software Engineer, Dipl.-Ing., Software Engineering, Software Engineer at Higher Institute of Applied Science and Technology of Soussehigh school diploma in computer science, Computer Science, Bachelor, high school diploma in computer science, Computer Science, Bachelor at high school Mohamed Ali El Hamma
French, English, Arabic, German
Stackoverflow
507reputation
64kreached
15answers
3questions
log4j
top-5%
apache-kafka
top-5%
Github Skills (82)
python10
deep-learning10
gpu10
gpu-acceleration10
numpy10
neural-network10
tensor10
sem10
volume-rendering10
zarr10
spim10
autograd10
n-dimensional10
multidimensional10
machine-learning10
Programming languages (10)
Github contributions (5)
BigDistributor/BigDistributor
Dec 2017 - Dec 2020
Distribute processing software manager to handle big tasks using limited resources and time.
Contributions:2 PRs, 146 pushes, 8 branches in 3 years
distributejavahandle
PreibischLab/RS-FISH-Spark
Apr 2021 - Sep 2022
Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud
Contributions:2 releases, 46 commits, 4 PRs in 1 year 5 months
spark
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