Mateusz Kaduk
Bioinformatician
Sweden
Summary
👤
Senior🎓
Top SchoolMateusz Kaduk is a bioinformatician with over two decades of research and engineering experience, currently developing algorithms and deep-learning models for next-generation sequencing at Karolinska Institutet. He combines a PhD in Bioinformatics with hands-on expertise in Python/PyTorch, Julia (contributor to FluxML), and cloud platforms to build classifiers and segmentation tools for immunogenomics and to discover novel gene segments via graph and motif-based methods. His work bridges classical statistical approaches—Bayesian models and network inference—with modern generative and NLP-inspired architectures applied to biological sequences. Comfortable moving between tooling and theory, he has a track record of translating methodological advances from PhD projects in orthology and phylogenetics into production-ready bioinformatics software.
21 years of coding experience
8 years of employment as a software developer
Master of science, Biotechnology, Master of science, Biotechnology at University of WarsawMaster of science, Biotechnology, Master of science, Biotechnology at Umeå UniversityResearcher, Biostatistics, Researcher, Biostatistics at University of AmsterdamDoctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at Stockholm University
Github Skills (200)
julia10
python10
flux10
machine-learning10
science10
trainer10
in-place10
bluepill9
data-science9
julialang9
programming-language9
notebook9
ipython9
hpc9
petsc9
Programming languages (18)
Github contributions (5)
mashu/mashu.github.io.hugo
Apr 2018 - Jun 2024
Contributions:27 pushes in 6 years 3 months
mashu/VDJDL.jl
Jun 2024 - Jun 2024
Deep Learning Models Repository for Immunoglobulin Receptor VDJ Sequences
Contributions:25 PRs, 83 pushes, 26 branches in 18 days
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