Mateusz Kaduk
Bioinformatician
Sweden
Summary
👤
Senior🎓
Top SchoolMateusz Kaduk is a bioinformatician with over two decades of research and engineering experience, currently developing algorithms and deep-learning models for next-generation sequencing at Karolinska Institutet. He combines a PhD in Bioinformatics with hands-on expertise in Python/PyTorch, Julia (contributor to FluxML), and cloud platforms to build classifiers and segmentation tools for immunogenomics and to discover novel gene segments via graph and motif-based methods. His work bridges classical statistical approaches—Bayesian models and network inference—with modern generative and NLP-inspired architectures applied to biological sequences. Comfortable moving between tooling and theory, he has a track record of translating methodological advances from PhD projects in orthology and phylogenetics into production-ready bioinformatics software.
21 years of coding experience
8 years of employment as a software developer
Master of science, Biotechnology, Master of science, Biotechnology at University of WarsawMaster of science, Biotechnology, Master of science, Biotechnology at Umeå UniversityResearcher, Biostatistics, Researcher, Biostatistics at University of AmsterdamDoctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at Stockholm University
Github Skills (200)
trainer10
science10
julia10
in-place10
flux10
machine-learning10
python-development9
model-compression9
julialang9
archlinux9
code-editor9
ubuntu9
programming-language9
python9
gps9
Programming languages (16)
Github contributions (5)
mashu/LineageCollapse.jl
Oct 2024 - May 2026
High-performance Julia package for performing lineage collapsing on immune repertoire sequencing data.
Contributions:4 releases, 7 PRs, 47 pushes in 1 year 7 months
juliasequencing
mashu/mashu.github.io.hugo
Apr 2018 - Jun 2024
Contributions:27 pushes in 6 years 3 months
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