Mathieu Courcelles
Research Associate At IRIC (Institute For Research In Immunology And Cancer)
Greater Montreal Metropolitan Area Canada
Summary
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Senior🎓
Top SchoolMathieu Courcelles is a research-focused bioinformatics engineer with 13 years of experience applying mass spectrometry and software development to proteomics and immunopeptidomics at IRIC and Université de Montréal. He builds end-to-end workflows—ranging from sample prep and phosphoproteomics LC-MS/MS to custom instrument control via IAPI and scalable bioinformatics microservices with Docker/Kubernetes. His work blends hands-on mass spec operation and method development (Q-Exactive, LTQ Orbitrap) with tools for data processing, visualization and instrument QC, enabling tighter feedback between experimentalists and developers. Notably, he has developed platforms for immunopeptidome analysis and cross-linking MS databases that reduce false positives and accelerate discovery. Fluent in both wet-lab proteomics and software engineering, he excels at translating complex biological questions into robust, reproducible computational solutions.
13 years of coding experience
Doctor of Philosophy (Ph.D.), Bioinformatics, Doctor of Philosophy (Ph.D.), Bioinformatics at Université de Montréal
French, English
Github Skills (139)
container-management10
api-management10
slurm10
dataflow10
cancer-genomics10
high-availability10
rancher10
genomes10
security10
consul10
genomics10
orchestration10
microservices10
medical10
reproducible-science10
Programming languages (13)
Github contributions (5)
courcelm/pyGeno
Aug 2016 - Mar 2020
pyGeno: A Python package for precision medicine and proteogenomics
Contributions:12 PRs, 28 pushes, 3 branches in 3 years 7 months
pythonprecision-medicineanalysisreductionprecision
courcelm/MSQCdb
Oct 2012 - Apr 2017
Contributions:41 commits, 2 pushes in 4 years 7 months
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