Matt Desaix
Senior Bioinformatics Scientist
Fort Collins, Colorado, United States
Summary
👤
Senior🎓
Top SchoolMatt Desaix is a Senior Bioinformatics Scientist with eight years of experience translating messy genomic datasets into actionable insights using statistical genetics, machine learning, and reproducible software pipelines. He has a strong track record in population genetics and wildlife genomics—authoring multiple peer-reviewed papers and building tools in R, Python, Bash, and Snakemake to automate eDNA, SNP-array, and genotype-likelihood workflows. At USDA APHIS he led spatially informed sample selection and ancestry/movement inference for wildlife, and now applies that expertise to product-focused genomics at CURIO Genomics. Comfortable bridging field ecology and computational methods, he pairs rigorous simulation and model validation with practical pipeline engineering. Outside the lab he’s an avid climber and skier in Colorado, which feeds his appetite for tackling complex, real-world data challenges.
8 years of coding experience
6 years of employment as a software developer
Doctor of Philosophy - PhD, Biology/Biological Sciences, General, Doctor of Philosophy - PhD, Biology/Biological Sciences, General at Colorado State UniversityMaster of Science - MS, Environmental Studies, Master of Science - MS, Environmental Studies at Virginia Commonwealth UniversityBachelor of Science - BS, Environmental Studies, Bachelor of Science - BS, Environmental Studies at Warren Wilson College
Github Skills (18)
vcf-files7
sequencing7
r-package6
simulation4
r4
simulate4
raster3
spatial3
bioinformatics3
geospatial3
spatial-data2
statistics2
hugo2
vector2
machine-learning1
Programming languages (6)
Github contributions (5)
mgdesaix/WGSassign
Sep 2022 - Mar 2026
Population assignment from genotype likelihoods for low-coverage whole-genome sequencing data
Contributions:2 releases, 1 review, 123 pushes in 3 years 6 months
sequencing
mgdesaix/mignette
Mar 2022 - Oct 2024
R package for creating migratory network models
Contributions:3 releases, 4 PRs, 73 pushes in 2 years 7 months
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