Matt Stone
Associate Director Of Engineering
West Windsor, New Jersey, United States
Summary
👤
Senior🎓
Top SchoolMatt Stone is an engineering leader and bioinformatics expert with 11 years of experience building tools, pipelines, and teams that enable others to deliver high-impact science and software. Currently Associate Director of Engineering at Fulcrum Genomics after roles from Principal to Staff Bioinformatics Scientist, he blends hands-on data science with engineering management to productionize genomics workflows. His background spans academic and clinical research environments (Massachusetts General Hospital, Fred Hutch, UW–Madison) and biotech data roles, giving him a strong bridge between rigorous research and reliable production systems. Known for building developer-friendly pipelines and operational tooling, he focuses on making complex bioinformatics accessible and dependable for downstream users. Based in West Windsor, NJ, he brings both technical depth in biomedical data science and a knack for scaling teams and processes as projects grow. An often-overlooked strength is his consistent progression from practitioner to leader within the same organization, signaling an ability to evolve technical strategy while staying grounded in day-to-day engineering.
11 years of coding experience
5 years of employment as a software developer
M.S. Biomedical Data Science, M.S. Biomedical Data Science at University of Wisconsin-MadisonB.A. Computer Science, B.A. Computer Science at Dartmouth College
Github Skills (178)
python10
gene-expression10
genomics10
clustering10
bedtools10
next-generation-sequencing10
bam10
htslib10
api10
rna-seq10
bcftools10
genome10
tabix10
bayesian10
sequencing10
Programming languages (13)
Github contributions (5)
msto/dotfiles
Jul 2014 - Nov 2020
Contributions:65 commits, 77 pushes, 4 branches in 6 years 4 months
edward130603/BayesSpace
May 2020 - Aug 2021
Contributions:3 reviews, 347 commits, 11 PRs in 1 year 2 months
gene-expressionspatialresolutionenhancingclustering
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