Matteo Bonfanti
Senior Bioinformatics Technician
Milan, Lombardy, Italy
Summary
👤
Senior🎓
Top SchoolMatteo Bonfanti is a Senior Bioinformatics Technician with 11 years of experience bridging theoretical chemistry and large-scale genomic analysis, currently driving reproducible pipeline development at Human Technopole. He designs and implements scalable workflows (Nextflow, Snakemake, nf-core) and HPC-optimized solutions using containerization (Docker, Singularity) to accelerate single-cell RNA-seq and other sequencing projects. With a PhD in Chemical Science and a background in numerical simulation software, he brings rigorous scientific modeling skills to bioinformatics tool development. Proficient in Python, Bash and compiled languages, he focuses on automation, performance and reproducibility to turn complex biological data into actionable results. Colleagues rely on him for pragmatic, well-documented pipelines that balance research innovation with production-grade engineering.
12 years of coding experience
6 years of employment as a software developer
University of Milan
English, Italian, Spanish, German
Github Skills (15)
rna-seq10
bar-code10
next-generation-sequencing10
kallisto10
nf-core9
nextflow9
pipeline9
testing9
bioinformatics9
test-data9
linting8
linter8
bioinformatics-analysis7
python7
sequencing7
Programming languages (4)
Github contributions (5)
matbonfanti/leporello
Feb 2016 - Jul 2017
Contributions:107 commits, 59 pushes, 3 branches in 1 year 5 months
nfdata-omics/scrnaseq
Jan 2025 - Jul 2026
A single-cell RNAseq pipeline for 10X genomics data
Contributions:8 reviews, 4 PRs, 19 pushes in 1 year 6 months
rna-seqdevel-meeting
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