Matthew Berginski
Senior Computational Biologist II
Chapel Hill, North Carolina, United States
Summary
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Senior🎓
Top SchoolMatthew Berginski is a Senior Computational Biologist with 13 years of experience applying bioinformatics, machine learning, and quantitative image analysis to problems at the intersection of molecular biology and computing. He has led analysis and tool development in academia and industry—most recently at Tempus AI—building resources such as darkkinome.org and a widely used web app that has processed millions of microscopy images. Expert in R, Perl, MATLAB, Linux, and Git, with strong proficiency in Python and web technologies, he combines hands-on molecular biology (cloning, cell culture, fluorescence microscopy) with production-ready data pipelines. A PhD-trained biomedical engineer and NIH F32 awardee, he bridges experimental design and computational rigor to turn high-throughput assays into actionable biological insight.
13 years of coding experience
5 years of employment as a software developer
BS, Biomedical Engineering, BS, Biomedical Engineering at Georgia Institute of TechnologyPhD, Biomedical Engineering, PhD, Biomedical Engineering at University of North Carolina at Chapel Hill
English
Github Skills (53)
image-processing9
r9
r-package9
graphic9
shiny9
rna-seq9
drug-discovery8
python8
parallel-processing8
chemistry8
gene-expression8
data-visualisation8
bedtools8
parallelization7
filesystem7
Programming languages (10)
Github contributions (5)
IDG-Kinase/darkkinasekb
Feb 2018 - Jan 2023
Source code for the dark kinase knowledge base
Contributions:408 commits, 15 PRs, 264 pushes in 5 years
darkknowledge-basekinaseknowledge
mbergins/focal_adhesions
May 2013 - Jul 2022
Contributions:254 commits, 1 PR, 92 pushes in 9 years 3 months
image-processingpythonfocal
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