Matthew Jenior
Forward Deployed AI Engineer at Eli Lilly and Company
San Bruno, California, United States
Summary
👤
Senior🎓
Top SchoolMatthew Jenior is an AI systems architect and computational biologist with 11 years of experience applying multi-omics integration, machine learning, and metabolic modeling to biological problems. Currently a Senior Design Engineer at Ginkgo Bioworks, he blends production-focused AI systems work with deep domain expertise from postdoctoral research on microbial metabolism and a PhD studying gut microbiota interactions with C. difficile. His background spans industry and academia—Zymergen, Janssen, and university labs—where he built predictive models from 16S, metatranscriptomic, and metabolomic data. He is skilled at turning complex multi-omics datasets into actionable models and tooling that scale beyond exploratory analyses. Based in San Bruno, CA, he pairs rigorous experimental understanding with software engineering practices to drive reproducible, deployable solutions. An understated strength is his ability to bridge wet-lab intuition and computational systems design, enabling teams to translate biological hypotheses into robust AI-driven products.
11 years of coding experience
9 years of employment as a software developer
Doctor of Philosophy - PhD Microbiology and Immunology, Doctor of Philosophy - PhD Microbiology and Immunology at University of MichiganBachelor of Arts (BA) Biology, General, Bachelor of Arts (BA) Biology, General at Hiram College
Github Skills (26)
reaction10
infection10
transcriptomics10
transcript10
metagenomics10
machine-learning9
computational-biology8
systems-biology8
modeling8
sbml8
metabolic-models8
bioinformatics8
simulation7
jekyll7
constraint-programming7
Programming languages (5)
Github contributions (5)
mjenior/Jenior_CdifficileGENRE_2021
Jun 2019 - Oct 2021
Contributions:11 commits, 10 pushes in 2 years 4 months
mjenior/promptpal
Aug 2024 - Apr 2025
Python package for improved LLM interactions using the Google Gemini API.
Contributions:3 reviews, 29 PRs, 176 pushes in 7 months
llmopenai-apipython
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