Matthew Nguyen - Graduate Researcher

Matthew Nguyen

Graduate Researcher

Baltimore, Maryland, United States

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Summary

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Rockstar

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Top School

Matthew Nguyen is a graduate researcher and PhD student at Johns Hopkins University with nine years of experience applying computational techniques to health and medicine. He has a strong bioinformatics background from roles at Simon Fraser University, UBC, and a bioinformatics internship at Canexia Health, and contributes to the Bioconda ecosystem as a DevOps engineer and package maintainer—packaging tools like Pathogist and SpoTyping3 to improve reproducible bioinformatics workflows. His work spans research, teaching, and hands-on tooling for reproducible analyses, combining academic rigor with practical software engineering. Based in Baltimore, he brings cross-disciplinary training (BSc, MSc, and ongoing PhD) and a proven track record of maintaining complex build recipes across Python versions. Unusually for a researcher, he sustained a decade-long parallel career as a professional pianist and organist, reflecting discipline and creativity outside the lab. He focuses on translating computational methods into reliable, deployable tools that accelerate biomedical research.

9 years of coding experience

6 years of employment as a software developer

Johns Hopkins University

Associate's degree with Distinction, Associate's degree with Distinction at University of West London

Bachelor of Science - BSc, Bachelor of Science - BSc at Simon Fraser University

Master of Science - MSc, Master of Science - MSc at The University of British Columbia

High School, High School at Sir Winston Churchill Secondary School

Github Skills (8)

bioinformatics10

conda10

package-management10

python10

bash9

cicd7

dockers7

docker7

Programming languages (16)

C#JavaC++CSSCCMakeNextflowHTML

Github contributions (5)

bioconda/bioconda-recipes

Jan 2019 - Aug 2019

Conda recipes for the bioconda channel.

Role in this project:

DevOps Engineer & Package Maintainer

Contributions:6 commits, 10 PRs, 23 pushes in 6 months

Contributions summary:Matthew primarily contributed to the bioconda-recipes repository by creating and updating recipes for bioinformatics tools. They focused on packaging tools like Pathogist and SpoTyping3, modifying build scripts, and ensuring compatibility with different Python versions. Their work involved making necessary changes to setup files and build processes to enable successful package builds and testing within the bioconda environment. The user also updated existing recipes, reflecting their role in maintaining the quality and compatibility of packages within the bioconda ecosystem.

recipescondabiocondabioinformaticspackage-management

cidgoh/ontotrek

Oct 2020 - Aug 2022

A 3d ontology visualizer focusing on OBOFoundry.org ontologies

Contributions:20 commits, 3 PRs, 19 pushes in 1 year 10 months

focusingowlvisualizercytoscapejsobofoundry

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