Mengyi Liu
Senior Bioinformatics Engineer
China
Summary
👤
Senior🎓
Top SchoolMengyi Liu is a Senior Bioinformatics Engineer with nine years of computational biology experience and a PhD in Computational Biology and Bioinformatics from Duke, now applying her expertise at Novogene. She specializes in single-cell, multi-omics and spatial transcriptomics integration, having developed methods to map chromatin accessibility to tissue space and benchmark spatially variable gene detection. Mengyi combines strong software and pipeline engineering—building cloud-optimized NGS workflows and Jupyter-based tutorials—with hands-on research that identified novel immune cell markers and drug targets in industry and academia. Known on GitHub as "bioinformagician," she bridges deep algorithm development with practical, reproducible analysis and has taught workshops training others to run end-to-end spatial transcriptomics studies.
9 years of coding experience
1 year of employment as a software developer
Doctor of Philosophy - PhD Computational Biology and Bioinformatics, Doctor of Philosophy - PhD Computational Biology and Bioinformatics at Duke UniversityUniversity of California, San Diego
English, Chinese
Github Skills (16)
cran8
genomics7
single-cell-genomics7
bioinformatics7
rna-seq6
hla6
r-package5
genome5
sequencing4
pipeline3
snakemake2
google-cloud2
inference2
workflow-management1
protein-structure1
Programming languages (3)
Github contributions (5)
haozhe-an/Haiku_Generator
Dec 2018 - Jun 2024
Contributions:1 push in 5 years 7 months
miko-798/batch_effects_removal
Oct 2018 - Jan 2019
Contributions:12 commits, 11 pushes, 1 branch in 2 months
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