Michael Alonge
Lead Software Engineer, Computational Biology
Los Angeles, California, United States
Summary
👤
Senior🎓
Top SchoolMichael Alonge is a lead software engineer and computational biologist with 11 years of experience building cloud-native, production-ready systems for genomics and biotech. Currently leading computational biology engineering at Ohalo/Ohalo Genetics in Los Angeles, he combines a PhD-level computer science background with deep molecular biology training to bridge research and production. He specializes in scalable genomics pipelines and tooling that meet the demands of modern biotech workflows, shepherding projects from algorithmic development through deployment. Known for blending hands-on coding with team leadership, he brings both academic rigor from Johns Hopkins and practical lab-derived intuition from his early molecular roles.
11 years of coding experience
3 years of employment as a software developer
Doctor of Philosophy - PhD, Computer Science, Doctor of Philosophy - PhD, Computer Science at Johns Hopkins Whiting School of EngineeringUniversity of California Santa Cruz
Github Skills (41)
scaffold10
scaffolding10
sequence-analysis10
assembly10
genome10
package-management10
conda10
structural-variation10
pairwise10
genome-assembly10
bioinformatics10
genomics10
bioconda10
sequence-alignment9
fasta9
Programming languages (10)
Github contributions (5)
schatzlab/PodPlot
Aug 2019 - Mar 2021
Plot coverage or percent of total sequence as a function of minimum read length
Contributions:11 commits, 4 pushes, 1 issue in 1 year 7 months
malonge/DupCheck
Aug 2019 - Jun 2020
Contributions:13 commits in 9 months
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