Mike Marquet
Forscher at Universitätsklinikum Jena
Jena, Thuringia, Germany
Summary
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Top SchoolMike Marquet is a researcher based in Jena, Germany with eight years of experience applying sequencing and bioinformatics methods to microbiome and phage discovery. At Universitätsklinikum Jena since 2018 he has led studies on host DNA depletion and adaptive nanopore sequencing in human vaginal samples and developed scalable workflows for phage identification. Trained with a Master in Pharma-Biotechnology, he blends wet-lab expertise and computational analysis to translate complex sequencing data into reproducible pipelines. Notably, his work emphasizes practical enrichment strategies that improve microbial signal in clinical samples, bridging methodological innovation and translational application.
7 years of coding experience
Master, Pharma-Biotechnologie, Master, Pharma-Biotechnologie at Ernst-Abbe-Hochschule Jena
Github Skills (17)
reproducible-science10
nextflow10
bioinformatics10
singularity9
docker9
pipeline6
metagenomics3
binning2
assembly1
genes1
testing1
command-line-tool1
scalable1
bioconda1
hybrid1
Programming languages (2)
Github contributions (5)
mult1fractal/wtp-documentation
Oct 2020 - Nov 2022
Contributions:2 PRs, 52 pushes, 1 branch in 2 years 1 month
mult1fractal/adaptive_sampling_decision_splitter
Jul 2021 - Jul 2024
Contributions:1 PR, 13 pushes, 2 branches in 3 years
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