Mohamed Abuelanin
Postdoctoral Researcher at University of California, Davis
Davis, California, United States
Summary
👤
Senior🎓
Top SchoolMohamed Abuelanin is a postdoctoral researcher and software-focused computational biologist with a PhD in Computer Science from UC Davis and a decade of experience building scalable research software. His work centers on creating efficient tools to transform and analyze rapidly expanding biological datasets, informed by graduate research in the Titus Brown lab and current work in the Dennis lab. He brings a rare blend of R&D and full-stack development experience from industry and academia, plus hands-on teaching and bioinformatics instruction. Based in Davis, CA, Mohamed combines rigorous engineering practices with domain knowledge in NGS and data-intensive biology to turn complex biological questions into reproducible, high-performance software.
10 years of coding experience
11 years of employment as a software developer
Doctor of Philosophy - PhD, Computer Science, 3.885, Doctor of Philosophy - PhD, Computer Science, 3.885 at University of California, DavisMaster of Science (MSc), Computer Science, Master of Science (MSc), Computer Science at Nile UniversityBachelor of Science (B.Sc.), Biomedical Engineering, Bachelor of Science (B.Sc.), Biomedical Engineering at Higher Technological Institute
English, Arabic
Github Skills (123)
package-management10
python10
genomics10
kallisto10
genes10
minhash10
unordered-map10
rna-seq10
sketching10
hash10
rust10
memory-footprint10
genome10
conda10
sequencing10
Programming languages (15)
Github contributions (5)
dib-lab/kProcessor
Sep 2018 - Aug 2022
kProcessor: kmers processing framework.
Contributions:2 releases, 7 reviews, 538 commits in 3 years 11 months
processing-frameworkkuberneteskmers
dib-lab/kSpider
Aug 2019 - Jan 2023
A simple yet powerful sequence clustering tool.
Contributions:206 commits, 25 PRs, 237 pushes in 3 years 5 months
clusteringdna-sequencesdnaproteinskipmers
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