Monika Cechova
Summary
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SeniorMonika Cechova is an interdisciplinary scientist combining biology, bioinformatics, and computer science with 11 years of research and engineering experience across academia in the United States and Europe. Currently an Assistant Professor at Masaryk University's Faculty of Informatics, she previously led postdoctoral and bioinformatics projects at UC Santa Cruz, Penn State, CEITEC and the Academy of Sciences, focusing on genome assembly, sex chromosome evolution, and early embryonic development using next‑generation sequencing and long‑read technologies. She has hands‑on experience with PacBio, Oxford Nanopore and BioNano, and a track record of creative visualization and analysis of complex multi‑copy gene families that bridge wet‑lab questions and computational solutions. Trained with a PhD from Penn State and degrees in bioinformatics and computer science from Masaryk University, she brings a rare blend of experimental insight and software skills to genomics problems. Notably, her work has contributed to understanding heterochromatin variability and male fertility gene evolution in great apes—an example of applying computational genomics to evolutionary and practical breeding questions.
11 years of coding experience
Github Skills (11)
rna-seq4
bioinformatics4
sequencing4
dna-sequences3
genomics3
sdk3
cli2
command-line2
pytorch1
deep-learning1
common-workflow-language1
Programming languages (5)
Github contributions (5)
biomonika/linkyx
Feb 2015 - Apr 2018
Contributions:3 commits, 2 pushes in 3 years 2 months
biomonika/HPP
Sep 2022 - Mar 2023
Contributions:70 commits, 1 PR, 239 pushes in 6 months
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