Moustafa聽Shokrof
Genomic Applications Bioinformatician
New York, New York, United States
Summary
馃懁
Senior馃帗
Top SchoolMoustafa Shokrof is a Genomic Applications Bioinformatician with 11 years of bioinformatics experience and a PhD in Computer Science from UC Davis, now applying scalable software engineering to petascale genomics at Oxford Nanopore Technologies. He designs and ships production-ready tools for population-scale variant analysis鈥攎ost notably The Great Genotyper for genotyping structural variants across thousands of genomes鈥攁nd builds compact data structures and workflows that bridge research and operations. His background spans industry and large national projects, including a novel compression algorithm for Ion Torrent BAMs and distributed variant-calling pipelines for the Saudi Genome Program. Comfortable both leading independent research and integrating best software practices in teams, he combines deterministic algorithms, machine learning, and systems engineering to make large genomic datasets tractable.
11 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy - PhD, Computer Science, Doctor of Philosophy - PhD, Computer Science at University of California, DavisMaster's degree, Informatics,Bioinformatics, Master's degree, Informatics,Bioinformatics at Nile UniversityBachelor's degree, Computer and Information Sciences, Bioinformatics, Bachelor's degree, Computer and Information Sciences, Bioinformatics at Ain Shams University
Github Skills (76)
graph-traversal10
memgraph10
mer10
bloom-filter10
minhash10
filtering10
traversal10
ssa10
count-min-sketch10
counting10
bioinformatics10
sequence10
python9
in-memory9
graph9
Programming languages (9)
Github contributions (5)
ionCRAM/ionCRAM
Mar 2019 - Jun 2020
Contributions:6 commits, 5 pushes, 1 branch in 1 year 3 months
dib-lab/MQF
Jan 2018 - Apr 2022
Contributions:259 commits, 5 PRs, 121 pushes in 4 years 3 months
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