Naomi Fox
Staff Software Engineer, Clinical CMS Team at Labcorp
San Francisco, California, United States
Summary
👤
Senior🎓
Top SchoolNaomi Fox is a Staff Software Engineer with 18 years of experience building systems to manage and analyze biological data, currently leading literature search and curation programs for variant classification at Labcorp. She blends deep bioinformatics and computational biology expertise with practical software engineering skills across Python, Java, C++, SQL and web stacks, and has led teams delivering NLP-driven biomedical information retrieval and variant interpretation services. Naomi has technical leadership experience integrating complex clinical tools (e.g., the Moon exome analysis) and architecting model-serving solutions for variant annotations while navigating PHI and regulatory constraints. Her background spans academia and national labs—designing protein-structure databases and analysis tools—bringing a research-first mindset to production systems. Known for turning noisy, unstructured biomedical literature into reliable inputs for clinical decision-making, she thrives at the intersection of algorithms, databases, and applied genomics.
18 years of coding experience
17 years of employment as a software developer
BA Computer Science, BA Computer Science at Smith CollegeBE Computer Engineering, BE Computer Engineering at Dartmouth CollegeDoctor of Philosophy (Ph.D.) Computer Science, Doctor of Philosophy (Ph.D.) Computer Science at University of Massachusetts Amherst
Stackoverflow
1reputation
0reached
0answers
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Github Skills (20)
genome-analysis9
genomics8
sequencing8
transcript8
bioinformatics8
avogadro7
computational-chemistry6
sequence-alignment5
docker-image4
ncbi4
python4
rendering2
modeling2
science2
editor1
Programming languages (2)
Github contributions (5)
naomifox/mass-email-delivery-code
Dec 2011 - Feb 2015
Contributions:171 commits, 6 pushes in 3 years 3 months
naomifox/uta
Jan 2018 - Jan 2018
Contributions:1 push, 1 branch in 1 day
genomedocker-imagealignmentsdockeralignment
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