Nezar Abdennur
Assistant Professor at UMass Chan Medical School
Newton, Massachusetts, United States
Summary
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Rockstar🎓
Top SchoolNezar Abdennur is an Assistant Professor at UMass Chan Medical School who leads a computational lab investigating 3D genome organization, its interplay with the epigenome, and impacts on cell fate, aging, and disease. With 14 years of experience spanning biochemistry, mathematics, biophysics, and computational biology, he blends deep academic training (PhD, MIT) with practical scientific software development and open-source stewardship. His group builds foundational tools for genomic and multiomic data science, aiming to make large-scale Hi-C and related analyses more reproducible and accessible. Prior roles include postdoctoral research at MIT, a rapid-response data operations stint scaling wastewater surveillance during COVID-19, and industry fellowships that sharpened his translational and machine learning skills. Based in Newton, MA, he combines rigorous quantitative modeling with hands-on software engineering to bridge theory and infrastructure in genomics. An often-overlooked strength is his cross-disciplinary fluency that lets him translate wet-lab questions into scalable computational solutions.
14 years of coding experience
10 years of employment as a software developer
Master of Science (MSc), Bioinformatics, Master of Science (MSc), Bioinformatics at University of Ottawa / Université d'OttawaPhD, Computational and Systems Biology, PhD, Computational and Systems Biology at Massachusetts Institute of Technology
Github Skills (181)
tiles10
python10
package-management10
render10
structural-variation10
indexed10
file-format10
extensible10
genomics10
computational-biology10
data-files10
priority-queue10
dataframes10
pandas10
pythonic10
Programming languages (13)
Github contributions (5)
nvictus/ArgUtils
May 2012 - Jun 2013
Contributions:76 commits in 1 year 1 month
nvictus/higlass-python
Jun 2019 - Mar 2023
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
Contributions:56 pushes, 2 branches in 3 years 8 months
pythonjupyter-notebooknotebookpython-bindingshiglass
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