Nicolas Chiaruttini
Collaborateur Scientifique - Analyse D'image Et Microscopie
Geneva, Geneva, Switzerland
Summary
👤
Senior🎓
Top SchoolNicolas Chiaruttini is a bio-image analyst and scientific collaborator at EPFL with nine years in academic research and a decade-long background in microscopy, image analysis and soft-matter biophysics. He designs, implements and supports advanced optical and electron microscopy workflows while developing custom image-analysis tools and teaching courses for platform users. His project leadership spans instrument procurement and build (including a 300 kCHF optical setup delivered in six months), successful grant writing for European funding, and contributions to high-impact publications (Cell, Nature Cell Biology). Comfortable at the interface of physics, molecular biology and computation, he combines hands-on lab engineering with object-oriented scientific software and science communication skills (graphics, video, press). Colleagues value his versatility, collaborative international network and knack for turning complex experimental needs into practical, well-documented platforms.
9 years of coding experience
Master 1 (M1), Physique, Master 1 (M1), Physique at Ecole normale supérieure de LyonClasse préparatoire aux grandes écoles, Biologie, admis à l'Ecole Normale Supérieure de Lyon, Classe préparatoire aux grandes écoles, Biologie, admis à l'Ecole Normale Supérieure de Lyon at Lycée Saint Louis, Paris, FranceMaster 2 (M2), Interface Physique Biologie, Master 2 (M2), Interface Physique Biologie at Université Denis Diderot (Paris VII)Baccalauréat, Baccalauréat at Lycée Jules Renard, Nevers, France
French, English
Stackoverflow
67reputation
248reached
0answers
1question
Github Skills (184)
toolbox10
metadata10
file-format10
qupath10
digital-pathology10
microscopy10
simulate10
bam10
atlas10
fiji10
pypi10
elastix10
image10
wsi10
imagej10
Programming languages (10)
Github contributions (5)
BIOP/ijp-imagetoatlas
Jan 2019 - Dec 2022
2D sections to 3D atlas registration with Fiji and QuPath
Contributions:7 releases, 690 commits, 7 PRs in 3 years 11 months
sectionsqupathregistrationfijiatlas
image-transform-converters/image-transform-converters
Jan 2019 - Oct 2022
Conversion between spatial transformations of various formats / parametrizations
Contributions:3 reviews, 42 commits, 4 PRs in 3 years 9 months
imageparametrizationsspatialtransformationsformats
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