Nicolas Soirat
Bioinformatics Scientist
Montpellier, Occitania, France
Summary
👤
Senior🎓
Top SchoolNicolas Soirat is a bioinformatics scientist with a PhD in medical bioinformatics and eight years of hands-on experience building and validating NGS analysis pipelines for cancer diagnostics. Based in Montpellier, he has progressed from internships to a CIFRE-funded doctorate and now a staff scientist role at SeqOne Genomics, focusing on somatic RNA workflows, microservice integrations, and platform engineering. He combines strong software engineering practices (Snakemake, Docker, GitLab-CI) and languages like Python, Nim and Groovy with clinical-grade validation experience in genomic medicine. Known for bridging research and production, he has delivered reproducible pipelines for fusion detection and somatic mutation calling used in real clinical and R&D settings. Outside work he’s deeply engaged in tech and geek culture, bringing curiosity-driven experimentation to practical bioinformatics problems.
8 years of coding experience
Master, Bioinformatique, Connaissances, Données, Master, Bioinformatique, Connaissances, Données at Université de MontpellierLicence, Biology, General, Licence, Biology, General at Université de NîmesBaccalauréat, Scientifique, Mention Bien, Baccalauréat, Scientifique, Mention Bien at Lycée Philippe Lamour
French, English, Spanish
Github Skills (8)
wdl6
seq3
rna-seq3
transcript3
discord2
pipeline2
bioinformatics2
assembly2
Programming languages (6)
Github contributions (5)
Nedss/GoCu
Mar 2021 - Jun 2024
A french disgusting bot, with an amazing language mastery.
Contributions:2 PRs, 3 pushes, 2 branches in 3 years 3 months
Nedss/nedss.github.io
Oct 2018 - Jul 2020
Contributions:37 pushes, 2 branches in 1 year 9 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.