Nikos Sidiropoulos
Product Owner at Novo Nordisk
Copenhagen, Capital Region of Denmark
Summary
👤
Senior🎓
Top SchoolNikos Sidiropoulos is a Product Owner and former senior research scientist with 11 years of experience at the intersection of bioinformatics, data visualization, and computational genomics. He combines a PhD in Bioinformatics and a background in computer science to study 3D genome folding and how mutations reshape chromatin architecture to drive tumorigenesis. Hands-on across research and product roles, he has contributed DevOps fixes to the widely used juicer Hi-C pipeline and built visualization tools like SinaPlot for complex multi-class data. Based in Copenhagen, he brings practical Linux/Galaxy administration and machine learning experience to bridge exploratory research and production workflows. Colleagues rely on him for turning intricate genomic analyses into reproducible pipelines and actionable product features.
11 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy - PhD Bioinformatics, Doctor of Philosophy - PhD Bioinformatics at Københavns Universitet - University of CopenhagenPtychion (4-year Bachelor) Computer Science, Ptychion (4-year Bachelor) Computer Science at Aristotle University of Thessaloniki (AUTH)
Greek, English, Danish
Github Skills (11)
bioinformatics10
bash10
ng10
pbs10
automation-testing9
automation9
automations9
cloud-infrastructure8
infrastructure8
docker6
dockers6
Programming languages (3)
Github contributions (5)
aidenlab/juicer
Feb 2019 - Feb 2019
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Role in this project:
DevOps Engineer
DevOps EngineerContributions:9 commits, 1 PR, 1 comment in 1 day
Contributions summary:Nikos's commits primarily focused on improving the `juicer.sh` script, which seems to be the main execution file for the Hi-C analysis pipeline. Contributions include refactoring and fixing script logic, like handling gzip files, and modifying job submission within the PBS environment. The changes also involve refactoring of the fastq file handling and the alignment process.
analyzingone-clickpipeline-framework3d-genomeresolution
sidiropoulos/sidiropoulos.github.io
Dec 2019 - Oct 2024
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Contributions:11 pushes in 4 years 10 months
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