Niu Du
Senior Bioinformatics Software Engineer
San Diego, California, United States
Summary
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Senior🎓
Top SchoolNiu Du is a Senior Bioinformatics Software Engineer in San Diego with eight years of experience building cloud-native NGS pipelines, ML-driven analysis tools, and validation systems for clinical and drug-discovery settings. With a PhD from UC San Diego, Niu has moved fluidly between academia and industry—developing Bayesian toolkits for undersampled clinical data, ML models for assay classification, and weight-aware Negative Binomial estimators for ASO detection. He has led end-to-end pipeline design on GCP, containerized deployments, and CI/CD practices while cutting sequencing costs through automated oligo design and improving assay robustness for IVD products. Known for pragmatic mentorship and solid production instincts, he pairs deep statistical rigor with hands-on engineering to translate complex biological problems into reliable, auditable software. An uncommon thread in his work is integrating advanced probabilistic methods into practical pipelines that handle outliers and sparse datasets routinely encountered in real-world assays.
8 years of coding experience
7 years of employment as a software developer
University of California, San DiegoBachelor of Science (BS) Chemistry, Bachelor of Science (BS) Chemistry at Ocean University of China
Github Skills (22)
bioinformatics7
rna-seq6
fasta6
genomics6
pypi6
bioconda6
fastq6
python5
aggregate5
barcodes4
structural-variation4
expression4
pipeline4
data-visualization4
transcriptomics3
Programming languages (2)
Github contributions (5)
ndu-bioinfo/Dap-Seq-pipeline
Jan 2019 - Aug 2020
Contributions:25 commits, 21 pushes, 2 branches in 1 year 7 months
ndu-UCSD/Deep_learning
Nov 2017 - Feb 2019
Contributions:22 pushes, 1 branch in 1 year 2 months
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