Oleksandr Moskalenko

Research Computing Applications And Facilitation Lead

Gainesville, Florida, United States
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Summary

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Oleksandr Moskalenko is a research computing leader with 19 years of experience building and supporting large-scale biocomputing infrastructure for life sciences research. As Research Computing Applications and Facilitation Lead at the University of Florida, he architects and deploys bioinformatics applications, Galaxy instances, reference databases, and web tools on heterogeneous supercomputing resources while providing training and hands-on user support. He uniquely bridges wet- and dry-lab science, combining a PhD in Biochemistry and Molecular Biology and postdoctoral lab experience with strong skills in programming, databases, and system administration. His work enables world-class researchers to run production-scale analyses on UF’s HiPerGator cluster, and he has long-standing involvement in Debian packaging and open-source project infrastructure. Known for pragmatic automation and reproducible workflows, he excels at turning complex computational needs into reliable, user-friendly services. Based in Gainesville, FL, he brings both deep domain knowledge and practical engineering to multidisciplinary teams.
code19 years of coding experience
job16 years of employment as a software developer
bookPh.D., Biochemistry and Molecular Biology, Ph.D., Biochemistry and Molecular Biology at Purdue University
bookB.S, Agricultural Mechanical Engineering, Design and Testing of Agricultural Machinery, B.S, Agricultural Mechanical Engineering, Design and Testing of Agricultural Machinery at National Agricultural University
languagesUkrainian, Russian, English
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Github Skills (173)

package-management10
python10
singularity-container10
genomics10
pipeline10
galaxy10
science10
bioconda10
data-science10
conda10
workflow-engine10
apptainer10
multi-user10
sequencing10
docker10

Programming languages (14)

JavaC++CMakefileGoHTMLPerlJupyter Notebook

Github contributions (5)

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moskalenko/tools-devteam

Jul 2015 - Mar 2020

Contains a set of Galaxy Tools mostly written by the Galaxy Team.
Contributions:6 pushes, 1 branch in 4 years 8 months
galaxy
moskalenko/vcf_fa_extractor

Feb 2014 - Mar 2017

Contributions:4 commits, 3 pushes in 3 years 1 month
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Oleksandr Moskalenko - Research Computing Applications And Facilitation Lead