Oliver Stolpe
Systems & Data Engineer
Berlin, Germany
Summary
👤
Senior🎓
Top SchoolOliver Stolpe is a Systems & Data Engineer with 11 years of experience building and maintaining full-stack bioinformatics and HPC tools, currently working at Charité in Berlin. He co-develops VarFish and HPC Access and maintains Kiosc, combining hands-on engineering with practical operational experience supporting HPC user management and helpdesk workflows. Trained as a bioinformatician (M.Sc., Freie Universität Berlin), he bridges research and production by writing requirements, evaluating data management systems, and shipping reproducible pipelines. Colleagues know him as a communicative, team-oriented engineer who values others' work and prioritizes clear collaboration to keep complex systems reliable and usable.
10 years of coding experience
12 years of employment as a software developer
Master of Science (M.Sc.), Bioinformatics, Master of Science (M.Sc.), Bioinformatics at Freie Universität Berlin
English, German
Github Skills (114)
forge10
genomics10
bam10
htslib10
genetics10
bioinformatics10
diagnostics10
large-files9
fasta9
sam9
java-api9
conda9
sequencing9
versioning8
git-lfs8
Programming languages (12)
Github contributions (5)
varfish-org/cadd-rest-api
Sep 2019 - Dec 2024
Simple REST API wrapper for CADD-scripts
Contributions:3 reviews, 8 PRs, 47 pushes in 5 years 3 months
apiapi-wrapperrestcaddrest-api
bihealth/hpc-access
Feb 2022 - Jan 2025
Web interface for managing access and resource requests for the BIH cluster
Contributions:10 reviews, 239 PRs, 332 pushes in 2 years 11 months
clusterhpcweb-interfacedatabase-access
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