Paweł Piątkowski
Lead Systems Engineer at EPAM Systems
Poland
Summary
👤
Senior🎓
Top SchoolPaweł Piątkowski is a Lead Systems Engineer and bioinformatician with 10+ years of experience designing cloud-native infrastructures and production genomic analysis pipelines for industry and research. He builds end-to-end stacks—from Kubernetes operators for Cromwell/Nextflow to secure, large-scale cloud HPC environments—and has migrated and optimized platforms for Fortune 500 life science teams. Equally comfortable in R, Go, Python and bash, he pairs hands-on programming with infrastructure-as-code, CI/CD, and mentoring of Tier-2 support. Notably, he authored open-source operators (e.g., a Nextflow K8s operator) and restructured legacy DSL1 Nextflow pipelines into modular DSL2 workflows to improve parallelism and cloud readiness. Based in Poland, he blends academic rigor (PhD-level bioinformatics) with pragmatic engineering that moves genomics workflows from prototype to production.
10 years of coding experience
16 years of employment as a software developer
Master of Science (MSc), Biomedical/Medical Engineering, Master of Science (MSc), Biomedical/Medical Engineering at Częstochowa University of TechnologyDoctor of Philosophy (PhD), Bioinformatics, Doctor of Philosophy (PhD), Bioinformatics at Institute of Biochemistry and Biophysics, Polish Academy of Sciences
Polish, English, German, Esperanto
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (57)
genetics10
hail10
r-package10
gwas10
user-friendly9
r9
tooltip9
shiny9
bioinformatics9
risk-assessment9
shiny-apps9
genomics9
shell9
rust8
cli8
Programming languages (9)
Github contributions (5)
cosi1/cosi1.github.io
Aug 2016 - Sep 2023
Contributions:23 pushes, 1 branch, 1 comment in 7 years 2 months
cosi1/emacs-init
May 2022 - Oct 2024
Contributions:26 pushes in 2 years 5 months
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