Paweł Piątkowski
Poland
Summary
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SeniorPaweł Piątkowski is a Lead Systems Engineer and bioinformatician with 10+ years of experience designing cloud-native infrastructures and production genomic analysis pipelines for industry and research. He builds end-to-end stacks—from Kubernetes operators for Cromwell/Nextflow to secure, large-scale cloud HPC environments—and has migrated and optimized platforms for Fortune 500 life science teams. Equally comfortable in R, Go, Python and bash, he pairs hands-on programming with infrastructure-as-code, CI/CD, and mentoring of Tier-2 support. Notably, he authored open-source operators (e.g., a Nextflow K8s operator) and restructured legacy DSL1 Nextflow pipelines into modular DSL2 workflows to improve parallelism and cloud readiness. Based in Poland, he blends academic rigor (PhD-level bioinformatics) with pragmatic engineering that moves genomics workflows from prototype to production.
11 years of coding experience
Github Skills (49)
r-package10
shiny-apps10
r9
genetics9
tooltip9
gwas9
bioinformatics9
risk-assessment9
genomics9
shell8
rust8
hail8
testing8
command-line7
adam7
Programming languages (11)
Github contributions (5)
cosi1/cosi1.github.io
Aug 2016 - Sep 2023
Contributions:23 pushes, 1 branch, 1 comment in 7 years 2 months
cosi1/emacs-init
May 2022 - Oct 2024
Contributions:26 pushes in 2 years 5 months
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