Paweł Szczerbiak
Postdoctoral Researcher at Sano Centre for Computational Medicine
Krakow, Lesser Poland Voivodeship
Summary
👤
Senior🎓
Top SchoolPaweł Szczerbiak is a postdoctoral researcher and seasoned AI-focused software engineer with eight years of experience applying deep learning and statistical methods to structural bioinformatics and microbiome research. He develops production-grade frameworks for protein function annotation and large-scale structure prediction, and co-mentors junior scientists while bridging academic research with translational bioinformatics for live biotherapeutics. With a PhD in elementary particle physics and a background spanning theoretical physics, financial product engineering, and HPC-enabled Python development, he combines rigorous mathematical thinking with practical software engineering. Based in Krakow, he is equally comfortable teaching machine learning and building ML pipelines, and is known for tackling orphan protein sequences and creating representative atlases of human gut microbiome proteins—projects that reveal a knack for turning complex biological data into actionable computational resources.
8 years of coding experience
11 years of employment as a software developer
Bachelor of Engineering - BE, Technical Physics, Bachelor of Engineering - BE, Technical Physics at Politechnika ŁódzkaDoctor of Philosophy - PhD, Elementary Particle Physics, Doctor of Philosophy - PhD, Elementary Particle Physics at Uniwersytet Warszawski
English, Russian, French, Polish
Github Skills (24)
bioinformatics9
clustering9
protein-structure8
protein-sequences7
genomes7
file-structure7
genomics6
pipeline6
assembly6
proteins5
graph-convolutional-networks5
file-format5
protein-data-bank5
machine-learning5
chainer5
Programming languages (5)
Github contributions (5)
bioinf-mcb/DeepFRI
Jul 2023 - Oct 2024
Deep functional residue identification
Contributions:1 release, 3 PRs, 11 pushes in 1 year 2 months
deep-learningresidueidentification
PawelSzczerbiak/cif2pdb
Nov 2020 - Apr 2023
Convert mmCIF to PDB protein structure file format
Contributions:1 PR, 13 pushes, 3 branches in 2 years 4 months
file-formatpdbpdb-filesmmcifstructural-biology
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