Peter Carbonetto

Research Scientist at University of Chicago

Chicago, Illinois, United States
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Summary

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Senior
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Peter Carbonetto is a computational biologist and research scientist with 19 years of experience developing quantitative and computational methods to link genetic variation to human health. Based in Chicago, he has blended academic and industry work—spanning a Ph.D. in computer science, HFSP- and postdoctoral-funded research, a staff scientist role at Ancestry, and staff computational scientist work at UChicago’s Research Computing Center—advising and collaborating on large-scale, data-intensive projects. He focuses on statistical genetics and method development for genome-wide studies, bringing machine learning and computational-statistics rigor to biological questions. An active contributor to open-source research tooling, he has improved documentation and reliability in the popular workflowr project, underscoring his attention to reproducible research and usable software.
code19 years of coding experience
job19 years of employment as a software developer
bookDoctor of Philosophy (Ph.D.) Computer Science, Doctor of Philosophy (Ph.D.) Computer Science at The University of British Columbia
bookBachelor of Science (B.Sc.) Computer Science, Bachelor of Science (B.Sc.) Computer Science at McGill University
languagesEnglish, French
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Stackoverflow

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Github Skills (7)

rmarkdown10
documentation10
r10
project-management9
git9
website-design8
website-development8

Programming languages (11)

JuliaRShellC++CJavaScriptHTMLJupyter Notebook

Github contributions (5)

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workflowr/workflowr

Jun 2017 - May 2018

Organize your project into a research website
Role in this project:
userTechnical Writer & R Developer
Contributions:45 commits, 1 PR, 44 pushes in 10 months
Contributions summary:Peter primarily contributed to documentation and made minor code adjustments within the workflowr project. Their work involved adding comments to roxygen2 documentation for `wflow_start` and `wflow_build` functions, along with correcting spacing issues in header files. They also addressed testing issues by incorporating `Sys.sleep()` calls to address potential timing-related problems. Further documentation was produced to enhance the usability and clarity of the overall project.
rmarkdownpythonversion-controlorganizeresearch-website
pcarbo/lgsmfear

Jul 2013 - Apr 2017

Contributions:27 commits, 1 push in 3 years 9 months
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Peter Carbonetto - Research Scientist at University of Chicago