Philippe Hupé
Co-Director Of The Bioinformatics Platform
Greater Paris Metropolitan Region France
Summary
🎓
Top SchoolPhilippe Hupé is Co-Director of the Bioinformatics Platform at Institut Curie, bringing over eight years of focused leadership in omics data management, software engineering, DevOps and high-performance computing for biomedical research. He has built and led multiple specialist teams since 2007—spanning biostatistics, genomic data integration, interoperability and HPC—aligning technical infrastructure with research needs. A hands-on engineer and open-source contributor, he improved Nextflow’s reporting and monitoring to expose memory and resource usage, reflecting a strong interest in workflow performance visualization. Trained as a PhD mathematician with advanced degrees in statistics and agronomy, he combines rigorous analytical thinking with practical system design to make complex biological data more reproducible and traceable.
7 years of coding experience
22 years of employment as a software developer
Master of Science (M.Sc.), Statistics, Master of Science (M.Sc.), Statistics at Institut national agronomique Paris-GrignonDoctor of Philosophy (PhD), Mathematics, Doctor of Philosophy (PhD), Mathematics at AgroParisTech - Institut des sciences et industries du vivant et de l'environnement
Github Skills (12)
workflow-engine10
groovy10
nextflow10
javascript9
html9
data-visualization8
data-visualisation8
data-visualizations8
reproducible-research6
dataflow-programming6
dataflow6
bioinformatics5
Programming languages (10)
Github contributions (5)
nextflow-io/nextflow
Jan 2019 - Mar 2019
A DSL for data-driven computational pipelines
Role in this project:
Back-end Developer
Back-end DeveloperContributions:5 commits, 8 PRs, 38 comments in 1 month
Contributions summary:Philippe primarily focused on enhancing the reporting and monitoring capabilities of the Nextflow workflow engine. Their contributions included implementing memory usage metrics (peak RSS) in the workflow report and timeline views, enhancing the visualization of resource utilization. They added and modified code in JavaScript, Groovy, and HTML, specifically for displaying these metrics. Additionally, the user updated the documentation to provide details and examples for report metrics, showing a strong focus on the presentation and analysis of workflow performance.
singularity-containersbioinformaticsawsdataflowslurm
bioinfo-pf-curie/geniac
Nov 2019 - Jan 2023
Contributions:25 releases, 656 commits, 85 pushes in 3 years 1 month
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.