Prashant Kalvapalle
Postdoctoral Researcher Computer Science, Treangen Lab at Rice University
Houston, Texas, United States
Summary
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Senior🎓
Top SchoolPrashant Kalvapalle is a synthetic biologist and postdoctoral researcher blending metagenomics, LLM-driven tooling, and reproducible data workflows to lower barriers to environmental genomics. With a decade of experience at Rice University, he has designed and benchmarked plasmid host-range assays, developed RNA-amplicon sequencing workflows, and built snakemake pipelines that emphasize reproducible analysis. Currently he is deploying a domain-specific LLM chat agent to simplify metagenomics pipelines while continuing work at the interface of biosensing and microbial community engineering. An instructor in statistical practice for biologists, he pairs strong experimental skills with a knack for clean R visualizations and semi-automated data workflows. His interdisciplinary background (PhD Rice, MS Johns Hopkins, BS IIT Kanpur) and interest in pedagogy and visual design make him adept at translating complex wet-lab problems into accessible computational tools.
10 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy - PhD, Systems, Synthetic and Physical Biology, 3.83/4.00, Doctor of Philosophy - PhD, Systems, Synthetic and Physical Biology, 3.83/4.00 at Rice UniversityJohns Hopkins UniversityBachelor's Degree, Biological Sciences and Bioengineering, 9.2/10.0, Bachelor's Degree, Biological Sciences and Bioengineering, 9.2/10.0 at IIT Kanpur
English, Telugu, Hindi
Stackoverflow
395reputation
103kreached
15answers
2questions
Github Skills (99)
journal9
google-keep9
r-programming9
atom-plugin8
gist7
r7
wordpress7
microbiome6
windows6
shell6
tidy6
knowledge-graph6
knowledge-management6
dplyr6
forloop6
Programming languages (7)
Github contributions (5)
ppreshant/qPCR-analysis
Sep 2018 - Jan 2023
Contributions:360 commits, 330 pushes, 71 branches in 4 years 4 months
ppreshant/plate-reader-plotting
Mar 2019 - Aug 2024
Contributions:183 pushes, 24 branches, 7 issues in 5 years 6 months
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