Quentin Clayssen
Bioinformatician
Melbourne, Victoria, Australia
Summary
👤
Senior🎓
Top SchoolQuentin Clayssen is a bioinformatician with eight years’ experience building reproducible workflows and tools for large-scale NGS and metagenomic data across leading research institutes and industry. He has implemented production Nextflow and Snakemake pipelines, contributed backend code to the widely-used anvi’o platform for taxonomic estimation and metagenome outputs, and extended databases for state-of-the-art profiling tools like mOTUs. Comfortable at the intersection of molecular biology and software engineering, he moves quickly from algorithmic ideas to cloud-ready implementations and stakeholder-facing visualizations. Based in Melbourne, he brings a track record of fast turnaround analysis in both academic and commercial settings and a knack for making complex microbial genomics accessible through robust tooling.
8 years of coding experience
4 years of employment as a software developer
Master's degree, Bioinformatics/Biostatistics, Master's degree, Bioinformatics/Biostatistics at Université de Nantes
English, French
Github Skills (6)
bioinformatics10
python10
data-analysis10
database-management9
metagenomics9
biom9
Programming languages (7)
Github contributions (5)
merenlab/anvio
May 2019 - Sep 2019
An analysis and visualization platform for 'omics data
Role in this project:
Back-end Developer & Data Scientist
Back-end Developer & Data ScientistContributions:92 commits, 79 pushes, 1 issue in 4 months
Contributions summary:Quentin's commits primarily involve modifications to the `anvio` Python-based platform, focusing on taxonomic estimation and related database operations. The user implemented changes to the `taxoestimation.py` file, which indicates a focus on biological data analysis. Furthermore, the user updated the `scgsdatabase.py` with code for database handling and for generating output for metagenome.
pythonmetagenomicssciencemetatranscriptomicsphylogenomics
qclayssen/Detection-of-epistasis-patterns-in-genetic-data.
May 2019 - Apr 2021
Contributions:5 pushes, 1 branch in 1 year 11 months
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