Ramon Pfändler
Scientist at Botnar Institute of Immune Engineering – BIIE
Zurich, Zurich, Switzerland
Summary
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Senior🎓
Top SchoolRamon Pfändler is a scientist and doctoral-trained systems biologist based in Zurich with 11 years of research experience studying human induced pluripotent stem cell phenotypes across healthy individuals. He combines wet-lab expertise in iPSC culture, proximity labeling and high-throughput proteomics with computational strengths in self-supervised deep learning (scDINO) and multimodal data integration to link cell morphology to molecular states. At ETH Zurich he led high-content imaging and drug screening workflows and developed frameworks to fuse single-cell morphology with bulk and single-cell omics. His work bridges experimental and computational worlds, applying machine learning not just for classification but to reveal subtle, biologically meaningful heterogeneity. Now at the Botnar Institute of Immune Engineering, he continues to translate multi-omic insights into better understanding of pluripotency and cellular responses to perturbations.
11 years of coding experience
1 year of employment as a software developer
Master of Science, Quantitative and Systems Biology, Master of Science, Quantitative and Systems Biology at University of ZurichDoctor of Philosophy - PhD, Systems Biology, Doctor of Philosophy - PhD, Systems Biology at ETH ZürichHigh School Diploma, Economics and Law - bilingual, High School Diploma, Economics and Law - bilingual at Kantonsschule am Burggraben St. Gallen
German, English, French
Github Skills (7)
morphology9
ssh-keys7
self-supervised-learning7
vision-transformer5
tower5
ssh3
devops2
Programming languages (2)
Github contributions (5)
JacobHanimann/scDINO
Feb 2023 - Jan 2025
Self-Supervised Vision Transformers for multiplexed imaging datasets
Contributions:5 pushes, 1 comment in 1 year 10 months
fluorescence-microscopy-imaginggreyscale-imagehigh-content-screeningmorphologymulti-channel
pfaendler/ETH_SysBio_Exercises
Feb 2023 - Apr 2024
Contributions:19 pushes, 1 branch in 1 year 2 months
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