Raymond Lim
Bioinformatics Software Engineer V
Dublin, California, United States
Summary
👤
Senior🎓
Top SchoolRaymond Lim is a Bioinformatics Software Engineer V with 13 years of experience building scalable, production-grade platforms that bridge genomics research and clinical workflows. He designs and operates large-scale data pipelines (Nextflow, WDL, Snakemake) and cloud-first infrastructure across AWS, Azure, and GCP, including training foundation LLMs and deploying embeddings-driven slide search systems. At Memorial Sloan Kettering he scaled feature extraction across hundreds of thousands of pathology slides, architected fair compute allocation, and instituted CI/CD and testing best practices while mentoring junior engineers. Previously he led production sequencing dashboards and automated QC pipelines at Sema4, migrating critical infrastructure from on-prem to cloud. Raymond pairs deep domain knowledge in NGS and pathology with pragmatic engineering—optimizing both HPC and cloud workflows to turn complex scientific needs into reliable tools. Based in Dublin, California, he combines a strong academic background (MSc Bioinformatics) with hands-on experience delivering reproducible, high-throughput life-sciences software.
12 years of coding experience
12 years of employment as a software developer
Master's Degree, Bioinformatics, Master's Degree, Bioinformatics at University of British ColumbiaMSc, Bioinformatics, MSc, Bioinformatics at The University of British Columbia / UBC
English, French
Github Skills (58)
bioinformatics10
vep10
maf10
singularity9
dsl9
dataflow9
slurm9
reproducible-science9
package-management9
reproducible-research9
nextflow9
python9
groovy9
perl9
xmake9
Programming languages (6)
Github contributions (5)
raylim/scripts
Jun 2013 - May 2015
Contributions:670 commits, 1 PR, 119 pushes in 1 year 11 months
jrflab/modules
Jun 2013 - Oct 2017
Contributions:2635 commits, 90 PRs, 1300 pushes in 4 years 4 months
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