Rex Ying

Assistant Professor at Kumo.AI

New Haven, Connecticut, United States
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Summary

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Rex Ying is an assistant professor of computer science at Yale University and a Stanford PhD who specializes in graph neural networks, geometric representation learning, and large-scale graph ML with applications across knowledge graphs, recommender systems, social networks, and the natural sciences. He blends academic research with product-minded engineering as a founding engineer at Kumo.ai and through internships at DeepMind, Facebook, Pinterest, and Google, where he worked on graph nets, hierarchical models, and large-scale recommendation and de-biasing pipelines. Rex maintains active open-source work—such as a GNN model explainer and contributions to the influential GraphSAGE project—demonstrating a strong focus on model interpretability and practical evaluation. He recruits PhD students and postdocs interested in relational ML and is based in New Haven, bringing over a decade of experience that spans both theoretical advances and production-ready systems.
code11 years of coding experience
bookBachelor of Science (BS), CS, Math, 3.97 / 4.0, Bachelor of Science (BS), CS, Math, 3.97 / 4.0 at Duke University
bookDoctor of Philosophy (PhD), Computer Science, Doctor of Philosophy (PhD), Computer Science at Stanford University
languagesChinese, Italian
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Stackoverflow

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Github Skills (14)

machine-learning10
eval10
pytorch10
tensorflow10
graph-neural-network10
python10
evaluation10
gnn10
modeling9
data-analysis9
scikit-learn9
trainings9
scikit9
tensorboard7

Programming languages (5)

MDXC++ShellJupyter NotebookPython

Github contributions (5)

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RexYing/gnn-model-explainer

Dec 2018 - Jun 2020

gnn explainer
Role in this project:
userML Engineer
Contributions:88 commits, 1 PR, 2 pushes in 1 year 6 months
Contributions summary:Rex appears to be developing and refining a GNN-based model explainer. Their commits primarily focus on the implementation and modification of model architectures, including graph convolutional layers and attention mechanisms, within the context of a GNN explainer framework. The user's work involves modifying the base model and incorporating aspects like feature masking, demonstrating a focus on interpreting and explaining the model's behavior. They also made changes to training and evaluation scripts, indicating a role in model training and monitoring.
explainergnn
williamleif/GraphSAGE

Oct 2017 - Jul 2018

Representation learning on large graphs using stochastic graph convolutions.
Role in this project:
userML Engineer
Contributions:8 commits, 3 PRs, 7 pushes in 9 months
Contributions summary:Rex primarily focused on the evaluation and training processes for Protein-Protein Interaction (PPI) tasks within a graph representation learning context. They modified the existing evaluation scripts to assess model performance, including adding F1 score calculations and logistic regression baselines. The commits also incorporate modifications to the core training and prediction modules (graphsage/minibatch.py, graphsage/unsupervised_train.py, and graphsage/prediction.py), including loss functions and minibatch handling. This includes adjustments to loss computations and the incorporation of features and training data.
representationautoencodergraph-convolutional-networksconvolutionsdeep-learning
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Rex Ying - Assistant Professor at Kumo.AI