Ricardo Vialle - Instructor Computational Biologist

Ricardo Vialle

Instructor Computational Biologist

Chicago, Illinois, United States

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Summary

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Rockstar

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Top School

Ricardo Vialle is an instructor and computational biologist at Rush University Medical Center with a PhD in Bioinformatics and over 15 years of research experience translating genomic data into actionable insights. He brings seven years of focused professional bioinformatics practice across academic and clinical settings, including postdoctoral work at Mount Sinai and international collaborations at EMBL-EBI. Skilled in evolutionary and transcriptomic analyses, metagenomics, and developing bioinformatics web services, he also contributes to the Bioconda ecosystem as a package maintainer, ensuring tools like snakeSV install and run reliably. Comfortable at the intersection of biology and software, he pairs a strong computational background (computer systems and mathematics) with hands-on DevOps experience supporting reproducible pipelines. A detail-oriented scientist, he often bridges method development and practical deployment to accelerate translational research.

7 years of coding experience

Master’s Degree, Bioinformatics, Master’s Degree, Bioinformatics at Universidade Federal do Paraná

Doctor of Philosophy (Ph.D.), Bioinformatics, Doctor of Philosophy (Ph.D.), Bioinformatics at Universidade Federal de Minas Gerais

Portuguese, English

Github Skills (6)

bioinformatics10

conda10

package-management10

bash9

dockers5

docker5

Programming languages (5)

RShellCHTMLPython

Github contributions (5)

bioconda/bioconda-recipes

May 2021 - May 2022

Conda recipes for the bioconda channel.

Role in this project:

DevOps Engineer & Bioinformatics Package Maintainer

Contributions:4 reviews, 4 commits, 23 PRs in 11 months

Contributions summary:Ricardo primarily contributed to the bioconda-recipes repository by updating recipes for the `snakeSV` bioinformatics tool. Their work involved modifying build scripts (`build.sh`) to incorporate updated dependencies, correct file paths, and include additional example scripts within the package. This included updates to meta information and general package maintenance for the `snakeSV` package within the Bioconda ecosystem. The contributions focused on ensuring the proper installation and execution of `snakeSV`.

recipescondabiocondabioinformaticspackage-management

RajLabMSSM/AMP_AD_StructuralVariation

Feb 2021 - Mar 2022

Contributions:18 commits, 10 pushes, 1 branch in 1 year

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