Romain Studer
Independent Researcher - Bioinformatics Projects
United Kingdom
Summary
👤
Senior🎓
Top SchoolRomain Studer is an independent computational biologist with over a decade of experience building scalable bioinformatics pipelines that integrate sequences, structures, gene ontology and clinical datasets on HPC and cloud platforms. He has led bioinformatics teams at BenevolentAI, productionising Python/R workflows, designing knowledge-graph models and interrogating large perturbation and patient cohorts (LINCS, UK Biobank) to inform drug–target–disease relationships. His technical toolkit spans sequence alignment, phylogenetics, evolutionary-rate analysis, 3D homology modelling and structure-stability prediction, coupled with data engineering in SQL/Spark/Databricks. Romain combines deep academic training (PhD-level bioinformatics) with practical product-driven delivery and mentoring experience, and is comfortable turning exploratory notebooks into robust, deployable packages. An understated strength is his ability to harmonise heterogeneous methods and datasets into automated, reproducible pipelines that scale from single-protein studies to population-level analyses.
10 years of coding experience
12 years of employment as a software developer
PhD Bioinformatics, PhD Bioinformatics at University of LausannePhD Bioinformatics, PhD Bioinformatics at Swiss Institute of BioinformaticsDiploma Biology, Diploma Biology at University of Lausanne - UNIL
English, French
Github Skills (24)
binaries10
cffi10
ruby10
linuxbrew10
homebrew10
administration10
command-line-tool10
macos10
cli10
r9
interoperability9
r-package9
linux9
bioinformatics9
science9
Programming languages (2)
Github contributions (5)
romainstuder/evosite3d
Jun 2016 - Oct 2021
Contributions:6 commits, 18 pushes, 6 branches in 5 years 4 months
romainstuder/rpy2
Oct 2020 - Jul 2021
Interface to use R from Python
Contributions:2 PRs, 7 pushes, 2 branches in 9 months
r-packagepythondata-sciencecffirstats
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