Ryan Shean
Clinical Pathology Resident
Salt Lake City, Utah, United States
Summary
👤
Senior🎓
Top SchoolRyan Shean is a clinical pathology resident at the University of Utah and ARUP Laboratories with a decade of scientific and technical experience spanning clinical diagnostics and viral genomics. Previously a research scientist at UW Virology, he developed automated pipelines for viral discovery, metagenomic classification, and annotation using Python, Bash, and R, and applied those skills to analyze clinical samples. His background blends hands-on laboratory training (D.O. and BS in Microbiology) with reproducible computational workflows, enabling him to bridge wet-lab results and bioinformatic interpretation. Notably, he has experience scaling data-heavy analyses and building tooling for automatic characterization of novel viruses—skills that accelerate diagnostic insight in clinical settings. Based in Salt Lake City, he brings both clinical perspective and scripting fluency to pathology informatics and diagnostic metagenomics.
10 years of coding experience
4 years of employment as a software developer
Bachelor of Science - BS, Microbiology, 3.47, Bachelor of Science - BS, Microbiology, 3.47 at University of WashingtonD.O., Medicine, D.O., Medicine at Midwestern UniversityHigh School Diploma, High School Diploma at West Valley High School
Bangla
Github Skills (39)
virus10
biology10
mer10
vapid10
fastq-files10
annotations10
ncbi10
metadata10
genbank10
bioinformatics10
fasta10
minhash9
count-min-sketch9
pipeline9
graph-traversal9
Programming languages (6)
Github contributions (5)
rcs333/CLOMP
Mar 2019 - Aug 2019
Contributions:73 commits, 35 pushes in 4 months
rcs333/VAPiD
Dec 2016 - Jun 2021
VAPiD: Viral Annotation and Identification Pipeline
Contributions:1 release, 351 commits, 9 PRs in 4 years 7 months
vapidpipelineviralannotationidentification
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