Ryan Wick
Bioinformatician
Melbourne, Victoria, Australia
Summary
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Rockstar🎓
Top SchoolRyan Wick is a bioinformatician based in Melbourne with 11 years' experience specializing in long-read and hybrid bacterial genome assembly. He combines rigorous algorithmic thinking with practical tooling, contributing to widely used projects like Unicycler and improving core graph algorithms in SeqAn to address real-world issues such as stack overflows. His work spans back-end development, polishing assembly pipelines and refining performance-critical library code, reflecting a knack for turning complex computational biology problems into reliable, maintainable software. Trained at the University of Melbourne, he brings both academic depth and an open-source mindset to reproducible bacterial genomics.
11 years of coding experience
The University of Melbourne
Stackoverflow
629reputation
82kreached
3answers
6questions
Github Skills (16)
algorithm10
bioinformatics10
data-structures10
algorithms10
c-language10
cpp10
cprogramming-language10
python10
data-structure10
text-align9
text-alignment9
autosave6
qgraphicsview6
exceptions6
qt6
Programming languages (10)
Github contributions (5)
rrwick/Unicycler
Mar 2016 - Dec 2022
hybrid assembly pipeline for bacterial genomes
Role in this project:
Back-end Developer
Back-end DeveloperContributions:15 releases, 1370 commits, 12 PRs in 6 years 9 months
Contributions summary:Ryan appears to be primarily responsible for implementing and refining the codebase related to Unicycler, a hybrid assembly pipeline. Their commits focus on enhancing and debugging the `pacbio_hybrid_polish.py` script, including implementing features for insert size assessment and improvements to output formatting, with code modifications in the `assembly_graph.py` and `setup.py` files. These contributions are aimed towards creating a comprehensive and robust assembly for a given long read assembly.
genomesbacterial-genomespipelinegenome-assemblybioinformatics
seqan/seqan
Jul 2016 - Sep 2016
SeqAn's official repository.
Role in this project:Back-end Developer
Back-end DeveloperContributions:5 commits, 4 PRs, 8 comments in 1 month
Contributions summary:Ryan primarily focused on improving graph algorithms within the SeqAn library. Their contributions included refactoring the depth-first search algorithm to an iterative implementation, addressing potential stack overflow issues. They also made code review changes, improving code clarity and maintainability. The user's work touched upon core algorithmic components of the library, demonstrating a focus on performance and reliability.
simdsequenceindexingsequence-alignmentsseqan
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