Saad Khan
Bioinformatics Specialist I
Boston, Massachusetts, United States
Summary
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SeniorSaad Khan is a bioinformatics specialist with 12 years of experience applying computational genomics to cancer and plant biology, currently analyzing single-cell, spatial and whole-exome data for meningiomas and glioblastomas at Massachusetts General Hospital. He has a strong track record building reproducible pipelines and visualization tools—RShiny apps, automated RNA-seq workflows, and cloud-enabled genome analysis—developed across academic and industry roles. Saad’s prior work includes curating a multi-tissue T-cell atlas and deploying deep learning for RNA modification prediction, reflecting a blend of systems-level pipeline engineering and method development. Comfortable in Perl, R and high-performance computing environments, he repeatedly bridges research questions to production-ready analyses. Based in Boston, he brings both bench-to-bioinformatics experience and a history of shipped tools that improve data access and interpretation for clinical and research teams.
12 years of coding experience
11 years of employment as a software developer
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (86)
r-package10
single-cell-genomics10
biomedical10
cran10
single-cell-analysis9
variants9
spatial-transcriptomics9
seq9
transcriptomics9
genomics9
spatial9
proj9
bioinformatics9
rna-seq8
pipeline8
Programming languages (9)
Github contributions (5)
smk5g5/MU-PseUDeep
Nov 2018 - Oct 2019
Contributions:20 commits, 2 pushes in 11 months
smk5g5/Single_cell_WDLworkflows
Jun 2023 - Apr 2024
for dockstore
Contributions:64 pushes in 10 months
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